An always up-to-date list can be found here: https://orcid.org/0000-0003-1752-4305
Peer-reviewed papers
Ali, H. F., Fast, L., Khalil, A., Siebert, E., Liman, T., Endres, M., Villringer, K., & Kufner, A. (2022). White matter hyperintensities are an independent predictor of cognitive decline 3 years following first-ever stroke-results from the PROSCIS-B study. Journal of Neurology. https://doi.org/10.1007/s00415-022-11481-5
Kossen, T., Hirzel, M. A., Madai, V. I., Boenisch, F., Hennemuth, A., Hildebrand, K., Pokutta, S., Sharma, K., Hilbert, A., Sobesky, J., Galinovic, I., Khalil, A. A., Fiebach, J. B., & Frey, D. (2022). Toward Sharing Brain Images: Differentially Private TOF-MRA Images With Segmentation Labels Using Generative Adversarial Networks. Frontiers in Artificial Intelligence, 5, 813842.
Subramaniam, P., Kossen, T., Ritter, K., Hennemuth, A., Hildebrand, K., Hilbert, A., Sobesky, J., Livne, M., Galinovic, I., Khalil, A. A., Fiebach, J. B., Frey, D., & Madai, V. I. (2022). Generating 3D TOF-MRA volumes and segmentation labels using generative adversarial networks. Medical Image Analysis, 78, 102396.
Hu, J.-Y., Kirilina, E., Nierhaus, T., Ovadia-Caro, S., Livne, M., Villringer, K., Margulies, D., Fiebach, J. B., Villringer, A., & Khalil, A. A. (2021). A novel approach for assessing hypoperfusion in stroke using spatial independent component analysis of resting-state fMRI. Human Brain Mapping, 42(16), 5204–5216.
Foda, A., Kellner, E., Gunawardana, A., Gao, X., Janz, M., Kufner, A., Khalil, A. A., Geran, R., Mekle, R., Fiebach, J. B., & Galinovic, I. (2021). Differentiation of Cerebral Neoplasms with Vessel Size Imaging (VSI). Clinical Neuroradiology.
Aydin, O. U., Taha, A. A., Hilbert, A., Khalil, A. A., Galinovic, I., Fiebach, J. B., Frey, D., & Madai, V. I. (2021). An evaluation of performance measures for arterial brain vessel segmentation. BMC Medical Imaging, 21(1), 113.
Khalil, A., Röhrs, K., Nolte, C. H., & Galinovic, I. (2021). Total perfusion-diffusion mismatch detected using resting-state functional MRI. BJR|case Reports, 20210056.
Kufner, A., Khalil, A. A., Galinovic, I., Kellner, E., Mekle, R., Rackoll, T., Boehm-Sturm, P., Fiebach, J. B., Flöel, A., Ebinger, M., Endres, M., & Nave, A. H. (2021). Magnetic resonance imaging-based changes in vascular morphology and cerebral perfusion in subacute ischemic stroke. Journal of Cerebral Blood Flow and Metabolism
Kossen, T., Subramaniam, P., Madai, V. I., Hennemuth, A., Hildebrand, K., Hilbert, A., Sobesky, J., Livne, M., Galinovic, I., Khalil, A. A., Fiebach, J. B., & Frey, D. (2021). Synthesizing anonymized and labeled TOF-MRA patches for brain vessel segmentation using generative adversarial networks. Computers in Biology and Medicine, 104254.
Aydin, O. U., Taha, A. A., Hilbert, A., Khalil, A. A., Galinovic, I., Fiebach, J. B., Frey, D., & Madai, V. I. (2021). On the usage of average Hausdorff distance for segmentation performance assessment: hidden error when used for ranking. European Radiology Experimental, 5(1), 4.
Hilbert, A., Madai, V. I., Akay, E. M., Aydin, O. U., Behland, J., Sobesky, J., Galinovic, I., Khalil, A. A., Taha, A. A., Wuerfel, J., Dusek, P., Niendorf, T., Fiebach, J. B., Frey, D., & Livne, M. (2020). BRAVE-NET: Fully Automated Arterial Brain Vessel Segmentation in Patients With Cerebrovascular Disease. Frontiers in Artificial Intelligence and Applications, 3, 78.
Tanrıtanır, A., Villringer, K., Galinovic, I., Grittner, U., Kirilina, E., Fiebach, J., Villringer, A., & Khalil, A.A. (2020). The effect of scan length on the assessment of BOLD delay in ischemic stroke. Frontiers in Neurology, 11, 381.
Zihni, E., Madai, V. I., Livne, M., Galinovic, I., Khalil, A. A., Fiebach, J. B., & Frey, D. (2020). Opening the black box of artificial intelligence for clinical decision support: A study predicting stroke outcome. PloS One, 15(4), e0231166.
Villringer K, Zimny S, Galinovic I, Nolte CH, Fiebach JB, Khalil AA. The Association Between Recanalization, Collateral Flow, and Reperfusion in Acute Stroke Patients: A Dynamic Susceptibility Contrast MRI Study. Front. Neurol. 2019;10.
Bayrak Ş, Khalil AA, Villringer K, Fiebach JB, Villringer A, Margulies DS, et al. The impact of ischemic stroke on connectivity gradients. NeuroImage Clin. 2019;101947.
Castillo X, Castro-Obregón S, Gutiérrez-Becker B, Gutiérrez-Ospina G, Karalis N, Khalil AA, et al. Re-thinking the Etiological Framework of Neurodegeneration. Front. Neurosci. 2019;13:728.
Ovadia-Caro S, Khalil AA, Sehm B, Villringer A, Nikulin V V., Nazarova M. Predicting the response to noninvasive brain stimulation in stroke. Front. Neurol. 2019;10:302.
Fan AP, Khalil AA, Fiebach JB, Zaharchuk G, Villringer A, Villringer K, et al. Elevated brain oxygen extraction fraction measured by MRI susceptibility relates to perfusion status in acute ischemic stroke. J. Cereb. Blood Flow Metab. 2019;0271678X1982794.
Khalil, A.A., Mueller, S., Foddis, M., Mosch, L., Lips, J., Przesdzing, I., Temme, S., Flögel, U., Dirnagl, U., Boehm-Sturm, P., 2018. Longitudinal 19F magnetic resonance imaging of brain oxygenation in a mouse model of vascular cognitive impairment using a cryogenic radiofrequency coil. Magn. Reson. Mater. Physics, Biol. Med. 1–10. https://doi.org/10.1007/s10334-018-0712-x
Khalil AA, Villringer K, Filleböck V, Hu J-Y, Rocco A, Fiebach JB, Villringer A. Non-invasive monitoring of longitudinal changes in cerebral hemodynamics in acute ischemic stroke using BOLD signal delay. J. Cereb. Blood Flow Metab. 2018
Lakens D, Adolfi F, Albers C, Anvari F, Apps M, Argamon S, Baguley T, Becker R, Benning S, Bradford D, Buchanan E. … Khalil A … Zwaan RA. Justify your alpha. Nature Human Behavior. 2018
Galinovic I, Kochova E, Khalil A, Villringer K, Piper SK, Fiebach JB. The ratio between cerebral blood flow and Tmax predicts the quality of collaterals in acute ischemic stroke. PLoS One. 2018;13:e0190811.
Khalil AA, Ostwaldt A-C, Nierhaus T, Ganeshan R, Audebert HJ, Villringer K, Villringer A, Fiebach JB. Relationship Between Changes in the Temporal Dynamics of the Blood-Oxygen-Level-Dependent Signal and Hypoperfusion in Acute Ischemic Stroke. Stroke. 2017
Villringer K, Sanz Cuesta BE, Ostwaldt A-C, Grittner U, Brunecker P, Khalil AA, Schindler K, Eisenblätter O, Audebert H, Fiebach JB. DCE-MRI blood-brain barrier assessment in acute ischemic stroke. Neurology. 2016
Khalil AA, Hohenhaus M, Kunze C, Schmidt W, Brunecker P, Villringer K, Merboldt KD, Frahm J, Fiebach JB. Sensitivity of Diffusion-Weighted STEAM MRI and EPI-DWI to Infratentorial Ischemic Stroke. PLoS One. 2016
Jadavji NM, Farr TD, Lips J, Khalil AA, Boehm-Sturm P, Foddis M, Harms C, Füchtemeier M, Dirnagl U. Elevated levels of plasma homocysteine, deficiencies in dietary folic acid and uracil-DNA glycosylase impair learning in a mouse model of vascular cognitive impairment. Behav Brain Res. 2015
Ibrahim MM, Khalil AA, Khan UA. Offspring sex ratios among male tobacco smokers in Khartoum, Sudan. J Pak Med Assoc. 2012
Preprints
Hilbert, A., Madai, V. I., Akay, E. M., Aydin, O. U., Behland, J., Sobesky, J., Galinovic, I., Khalil, A. A., Taha, A. A., Würfel, J., Dusek, P., Niendorf, T., Fiebach, J. B., Frey, D., & Livne, M. (2020). BRAVE-NET: Fully Automated Arterial Brain Vessel Segmentation In Patients with Cerebrovascular Disease. In Neurology (No. medrxiv;2020.04.08.20057570v1). medRxiv. https://doi.org/10.1101/2020.04.08.20057570
Bayrak, Ş., Khalil, A.A., Villringer, K., Fiebach, J.B., Margulies, D.S., Ovadia-Caro, S., 2018. The impact of ischemic stroke on connectivity gradients. bioRxiv. https://doi.org/10.1101/481689
Lakens D, Adolfi FG, Albers C … Khalil AA … et al. Justify Your Alpha: A Response to ‘Redefine Statistical Significance’. PsyArXiv. Epub ahead of print 2017. DOI: 10.17605/OSF.IO/9S3Y6.
Book chapters
Khalil AA, 2017. Positron Emission Tomography (PET). In J Vonk & TK Shackelford, eds. Encyclopedia of Animal Cognition and Behavior. Springer, pp. 1–6.
Khalil AA, 2017. Blindsight. In J Vonk & TK Shackelford, eds. Encyclopedia of Animal Cognition and Behavior. Springer.
Peer review
See my Publons profile for details of my work reviewing manuscripts for scientific journals.
Ahmed A. Khalil 